Differential Display Methods and Protocols Book

Part I. Methodologies

Global Analysis of Gene Expression by Differential Display: A Mathematical Model

Shitao Yang and Peng Liang

Automation of Fluorescent Differential Display With Digital Readout

Jonathan D. Meade, Yong-jig Cho, Jeffrey S. Fisher, Jamie C. Walden, Zhen Guo, and Peng Liang

Ordered Differential Display

Mikhail V. Matz and Ella A. Meleshkevitch

GeneCalling®: Transcript Profiling Coupled to a Gene Database Query

Richard A. Shimkets

High-Density Sampling Differential Display of Prokaryotic mRNAs With RAP-PCR

Dana M. Walters and Pierre E. Rouvière

Vertical Arrays: Microarrays of Complex Mixtures of Nucleic Acids

Rosana Risques, Gaelle Rondeau, Martin Judex, Michael McClelland, and John Welsh

Automated Pattern Ranking in Differential Display Data Analysis

Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, and Olli S. Nevalainen

Linking cDNA-AFLP-Based Gene Expression Patterns and ESTs

Ling Qin, Pjotr Prins, and Johannes Helder

Part II. Applications

Differentially Expressed Genes Associated With Hepatitis B Virus HBx and MHBs Protein Function in Hepatocellular Carcinoma

Dae-Ghon Kim

Identification of Disease Markers by Differential Display: Prion Disease

Michael Clinton, Gino Miele, Sunil Nandi, and Derek McBride

Saturation Screening for p53 Target Genes by Digital Fluorescent Differential Display

Yong-Jig Cho, Susanne Stein, Roger S. Jackson II, and Peng Liang

Identification of p53-Regulated Genes by the Method of Differential Display

Yunping Lin, Roger P. Leng, and Samuel Benchimol

Identification by Differential Display of IL-24 Autocrine Loop Activated by Ras Oncogenes

Zhongjia Tan, Mai Wang, and Peng Liang

Comprehensive Analysis of Ovarian Gene Expression During Ovulation Using Differential Display

Lawrence L. Espey

Functional Analysis of Nocturnin: A Circadian Clock-Regulated Gene Identified by Differential Display

Julie E. Baggs and Carla B. Green

Isolation and Characterization of Anthocyanin 5-O-Glucosyltransferase in Perilla frutescens var. crispa by Differential Display

Mami Yamazaki and Kazuki Saito

Identification of Target Genes of a Yeast Transcriptional Repressor

Bernard Mai and Linda L. Breeden

Detection of an mRNA Polymorphism by Differential Display

Shan Liang, S. Paul Rossby, Peng Liang, Richard C. Shelton, D. Hal Manier, Amitabha Chakrabarti, and Fridolin Sulser

Silencing in Yeast: Identification of Clr4 Targets

Sergey V. Ivanov and Alla V. Ivanova

Identification of mRNA Bound to RNA Binding Proteins by Differential Display

Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian

Index