Mathematics of Evolution and Phylogeny Book

1	The minimum evolution distance-based approach to phylogenetic inference	1
2	Likelihood calculation in molecular phylogenetics	33
3	Bayesian inference in molecular phylogenetics	63
4	Statistical approach to tests involving phylogenies	91
5	Mixture models in phylogenetic inference	121
6	Hadamard conjugation : an analytic tool for phylogenetics	143
7	Phylogenetic networks	178
8	Reconstructing the duplication history of tandemly repeated sequences	205
9	Conserved segment statistics and rearrangement inferences in comparative genomics	236
10	The inversion distance problem	262
11	Genome rearrangements with gene families	291
12	Reconstructing phylogenies from gene-content and gene-order data	321
13	Distance-based genome rearrangement phylogeny	353
14	How much can evolved characters tell us about the tree that generated them?	384