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A Faster Algorithm for Approximate String Matching | 1 | |
Boyer-Moore Strategy to Efficient Approximate String Matching | 24 | |
Randomized Efficient Algorithms for Compressed Strings: The Finger-Print Approach | 39 | |
Filtration with q-Samples in Approximate String Matching | 50 | |
Computing Discoveries in Molecular Biology | 64 | |
Approximate Dictionary Queries | 65 | |
Approximate Multiple String Search | 75 | |
A 2 2/3 - Approximation Algorithm for the Shortest Superstring Problem | 87 | |
Suffix Trees on Words | 102 | |
The Suffix Tree of a Tree and Minimizing Sequential Transducers | 116 | |
Perfect Hashing for Strings: Formalization and Algorithms | 130 | |
Spliced Alignment: A New Approach to Gene Recognition | 141 | |
Original Synteny | 159 | |
Fast Sorting by Reversal | 168 | |
A Double Combinatorial Approach to Discovering Patterns in Biological Sequences | 186 | |
Poisson Process Approximation for Repeats in One Sequence and Its Application to Sequencing by Hybridization | 209 | |
Improved Approximation Algorithms for Tree Alignment | 220 | |
The Asymmetric Median Tree - A New Model for Building Consensus Trees | 234 | |
Constructing Computer Virus Phylogenies | 253 | |
Docking of Conformationally Flexible Proteins | 271 | |
Invariant Patterns in Crystal Lattices: Implications for Protein Folding Algorithms | 288 | |
Graph Traversals, Genes, and Matroids: An Efficient Case of the Travelling Salesman Problem | 301 | |
Alphabet Independent and Dictionary Scaled Matching | 320 | |
Analysis of Two-Dimensional Approximate Pattern Matching Algorithms | 335 | |
Approximation Algorithms for Maximum Two-Dimensional Pattern Matching | 348 | |
Efficient Parallel Algorithms for Tree Editing Problems | 361 | |
Approximate Pattern Matching in Directed Graphs | 373 | |
Finite-State Computability of Annotations of Strings and Trees | 381 | |
Author Index | 392 |
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