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Preface | ||
Foreword | ||
Abbreviations, symbols, units | ||
Glossary of terms | ||
Pt. I | Proteomics Technology | 1 |
Introduction | 1 | |
Expression proteomics | 11 | |
Two-dimensional Electrophoresis | 11 | |
Spot handling | 97 | |
Mass spectrometry | 108 | |
Protein identification by database searching | 135 | |
Methods of proteome analysis | 154 | |
Pt. II | Course Manual | 161 |
Step 1 | Sample preparation | 169 |
Step 2 | Isoelectric focusing | 187 |
Step 3 | SDS Polyacrylamide Gel Electrophoresis | 199 |
Step 4 | Staining of the gels | 233 |
Step 5 | Scanning of gels and image analysis | 239 |
Step 6 | Fluorescence difference gel electrophoresis | 249 |
Step 7 | Spot excision | 255 |
Step 8 | Sample destaining | 259 |
Step 9 | In-gel digestion | 261 |
Step 10 | Microscale desalting and concentration of sample | 263 |
Step 11 | Chemical derivatisation of the peptide digest | 265 |
Step 12 | MS analysis | 269 |
Step 13 | Calibration of the MALDI-ToF MS | 273 |
Step 14 | Preparing for a database search | 277 |
Step 15 | PMF database search unsuccessful | 281 |
A Trouble shooting | 283 | |
References | 295 | |
Index | 311 |
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