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Foreword | ||
Preface | ||
Pt. I | Analyzing DNA, RNA, and Protein Sequences in Databases | |
1 | Introduction | 3 |
2 | Access to Sequence Data and Literature Information | 15 |
3 | Pairwise Sequence Alignment | 41 |
4 | Basic Local Alignment Search Tool (BLAST) | 87 |
5 | Advanced BLAST Searching | 127 |
Pt. II | Genomewide Analysis of RNA and Protein | |
6 | Bioinformatic Approaches to Gene Expression | 157 |
7 | Gene Expression: Microarray Data Analysis | 189 |
8 | Protein Analysis and Proteomics | 223 |
9 | Protein Structure | 273 |
10 | Multiple Sequence Alignment | 319 |
11 | Molecular Phylogeny and Evolution | 357 |
Pt. III | Genome Analysis | |
12 | Completed Genomes and the Tree of Life | 397 |
13 | Completed Genomes: Viruses | 437 |
14 | Completed Genomes: Bacteria and Archaea | 465 |
15 | Eukaryotic Genomes: Fungi | 503 |
16 | Eukaryotic Genomes: From Parasites to Primates | 539 |
17 | Human Genome | 607 |
18 | Human Disease | 647 |
Epilogue | 695 | |
App | GCG for Protein and DNA Analysis | 697 |
Glossary | 717 | |
Solutions to Self-Test Quizzes | 735 | |
Subject Index | 737 | |
Author Index | 753 |
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